Gallery
About
Reading a paper means opening a PDF, then hunting separately for the code, the citations, whether it replicated, and what genes/drugs it touches. I spent a few months trying to fix that.Two parts:1. The map: I embedded 8.5M papers (arXiv, PubMed Central, bioRxiv, medRxiv), ran UMAP to lay them out in 2D, and render them with a WebGL scatterplot. Every dot is a paper — click it for an LLM TLDR, key findings, citations, peer reviews (where they exist), and similar work. Zoom in and the clusters are labeled by topic.2. Rich paper pages + an MCP server: each paper is rebuilt with linked genes/proteins/diseases/drugs (normalized to real IDs via PubTator, not regex), clinical trials, 3D structures, code, and a citation graph. It's all exposed as an MCP server too, so you can point Claude or an agent at 8.5M papers instead of pasting PDFs.Stack: Next.js, Postgres (Neon), Cloudflare R2 for content, embeddings + UMAP/HDBSCAN for the map, a WebGL renderer. The hard part was the ingestion pipeline — 45+ heterogeneous sources normalized into one schema — and keeping entity links accurate, since papers use names not accession IDs (so curated link tables + PubTator beat regex every time).Free, no signup to explore. I'd love feedback on the map UX and whether the TLDRs/entity links hold up for papers you know well.Known limits: Google indexing is still slow so title-search isn't great yet, some older arXiv figures are missing, and peer-review coverage is partial.
Comments (4)
academic market won't pay. semantic scholar already covers this free.
does it pull code links automatically or manual entry?
so who pays for this, broke grad students or pharma?
which databases does the gene/drug linking pull from?
Related Products
Game Assessment Prep
The Only Platform To Master All 11 Hirevue Games
Smart Ideas Database
Ready-to-sell platform with hundreds of low competition business ideas
Stack Interview
Practice. Code. Interview. All in one free platform.
Mock Mastet
MockMaster is a free, all-in-one prep platform for JEE and NEET aspirants. It pr
Tigrice
Everything About Parrots and Birds
LingoChunk
ComingUp